MRIQC: individual T1w report

Summary

Subject ID: 042_ControlPre.
Date and time: 2018-05-06, 22:12.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.26110889438175666
cnr			4.6321215414318155
efc			0.5652662296290055
fber			115.28330993652344
fwhm	avg		4.0276266666666665
fwhm	x		3.8918
fwhm	y		4.39625
fwhm	z		3.79483
icvs	csf		0.20121834542460715
icvs	gm		0.4510083263433196
icvs	wm		0.34777332823207324
inu	med		1.0673942565917969
inu	range		0.28236195743083947
qi	1		0.0
qi	2		0.0009073680550670521
rpve	csf		24.628612485356214
rpve	gm		12.240847164519055
rpve	wm		18.832653940372015
size	x		180
size	y		256
size	z		256
snr	csf		2.7284908825051346
snr	gm		11.198887291693273
snr	total		10.07544190987452
snr	wm		16.298947555425155
snrd	csf		16.74640622267364
snrd	gm		34.2559909105911
snrd	total		35.59704245777962
snrd	wm		55.788730240074116
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.4364104689913306
summary	bg	mad	11.743230819702148
summary	bg	mean	46.70826721191406
summary	bg	median	45.398502349853516
summary	bg	n	2948105.0
summary	bg	p05	28.56855621337891
summary	bg	p95	69.55052947998047
summary	bg	stdv	13.134675025939941
summary	csf	k	-0.33206772605710944
summary	csf	mad	124.89991760253906
summary	csf	mean	299.00299072265625
summary	csf	median	300.17706298828125
summary	csf	n	13090.0
summary	csf	p05	129.70699920654297
summary	csf	p95	475.37713012695315
summary	csf	stdv	110.01158142089844
summary	gm	k	0.04058454559330782
summary	gm	mad	54.517032623291016
summary	gm	mean	613.9431762695312
summary	gm	median	614.0339965820312
summary	gm	n	38378.0
summary	gm	p05	522.674169921875
summary	gm	p95	702.9638549804688
summary	gm	stdv	54.82919692993164
summary	wm	k	1.2672358124987513
summary	wm	mad	46.26354217529297
summary	wm	mean	989.2273559570312
summary	wm	median	1000.0054321289062
summary	wm	n	187802.0
summary	wm	p05	856.2866088867188
summary	wm	p95	1069.2676635742187
summary	wm	stdv	61.353824615478516
tpm	overlap	csf	0.2055465579032898
tpm	overlap	gm	0.5261529088020325
tpm	overlap	wm	0.5414004325866699
wm2max			0.5707712766124381

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	c0ff8bd03aaa7663632df6db664314ed
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.