MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.26110889438175666
cnr4.6321215414318155
efc0.5652662296290055
fber115.28330993652344
fwhmavg4.0276266666666665
fwhmx3.8918
fwhmy4.39625
fwhmz3.79483
icvscsf0.20121834542460715
icvsgm0.4510083263433196
icvswm0.34777332823207324
inumed1.0673942565917969
inurange0.28236195743083947
qi10.0
qi20.0009073680550670521
rpvecsf24.628612485356214
rpvegm12.240847164519055
rpvewm18.832653940372015
sizex180
sizey256
sizez256
snrcsf2.7284908825051346
snrgm11.198887291693273
snrtotal10.07544190987452
snrwm16.298947555425155
snrdcsf16.74640622267364
snrdgm34.2559909105911
snrdtotal35.59704245777962
snrdwm55.788730240074116
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.4364104689913306
summarybgmad11.743230819702148
summarybgmean46.70826721191406
summarybgmedian45.398502349853516
summarybgn2948105.0
summarybgp0528.56855621337891
summarybgp9569.55052947998047
summarybgstdv13.134675025939941
summarycsfk-0.33206772605710944
summarycsfmad124.89991760253906
summarycsfmean299.00299072265625
summarycsfmedian300.17706298828125
summarycsfn13090.0
summarycsfp05129.70699920654297
summarycsfp95475.37713012695315
summarycsfstdv110.01158142089844
summarygmk0.04058454559330782
summarygmmad54.517032623291016
summarygmmean613.9431762695312
summarygmmedian614.0339965820312
summarygmn38378.0
summarygmp05522.674169921875
summarygmp95702.9638549804688
summarygmstdv54.82919692993164
summarywmk1.2672358124987513
summarywmmad46.26354217529297
summarywmmean989.2273559570312
summarywmmedian1000.0054321289062
summarywmn187802.0
summarywmp05856.2866088867188
summarywmp951069.2676635742187
summarywmstdv61.353824615478516
tpmoverlapcsf0.2055465579032898
tpmoverlapgm0.5261529088020325
tpmoverlapwm0.5414004325866699
wm2max0.5707712766124381

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumc0ff8bd03aaa7663632df6db664314ed
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.